The software can export results in a CODIS recognized format (cmf v1.0 and 3.0).

The PQV system automatically assigns values to the quality of the data in respect to sizing and allele calling. Poor quality samples are those below the user defined thresholds.

GeneMapper^® ID database stores the following data:

• Predefined and custom designed size standard definitions
• Panel, marker (loci), and allele bin definitions
• Analysis methods
• Table profiles (for generating tabular reports)
• Saved projects with sizing and genotyping results
• Matrix files (310 and 377 instruments only)
• Plot settings

• GeneMapper^® ID software compares genotype concordance between overlapping loci among different AmpFL STR kits for the same sample(s), or concordance of genotype calls from duplicate amplifications or duplicate injections of the same sample.
• Positive and negative controls give the expected allele calls.

• When exporting from the Samples view, you can now export samples that do not pass sizing along with samples that pass sizing. This feature combines columns from the sample table and the genotype table and exports them as a single table.
• There are two display options when exporting samples: -one line per marker and - one line per sample (This is similar to the Make Allele table in the Genotyper^® Software.)

• The software now provides the option to display labeled peak assignments for all size standards. The user can quickly identify peaks visually and perform a size precision test. The labeled peak assignments are printable.
• When switching from the "align by base pair" to the "align by data point" views for the x-axis, the labels associated with the peaks are now retained in both views.

Genemapper ID uses the average sizes of the alleles between multiple run allelic ladders to deteremine the allelic bin offsets (whereas Genotyper uses a single run ladder sample).